All modules for which code is available
- galaxy.tool_util.deps.dockerfiles
- galaxy.tool_util.loader_directory
- planemo.autopygen.argument_parser_conversion
- planemo.autopygen.commands.command_utils
- planemo.autopygen.param_info
- planemo.autopygen.source_file_parsing.decoy_parser
- planemo.autopygen.source_file_parsing.local_module_parsing
- planemo.autopygen.source_file_parsing.parser_discovery_and_init
- planemo.autopygen.source_file_parsing.parsing_commons
- planemo.autopygen.source_file_parsing.parsing_exceptions
- planemo.autopygen.source_file_parsing.unknown_names_discovery
- planemo.autopygen.xml.xml_utils
- planemo.autoupdate
- planemo.ci
- planemo.cli
- planemo.cli_metadata
- planemo.commands.cmd_clone
- planemo.commands.cmd_container_register
- planemo.commands.cmd_format
- planemo.conda
- planemo.config
- planemo.context
- planemo.cwl.run
- planemo.cwl.toil
- planemo.database.factory
- planemo.database.interface
- planemo.database.postgres
- planemo.database.postgres_docker
- planemo.database.postgres_singularity
- planemo.deps
- planemo.engine.cwltool
- planemo.engine.factory
- planemo.engine.galaxy
- planemo.engine.interface
- planemo.engine.toil
- planemo.exit_codes
- planemo.galaxy.activity
- planemo.galaxy.api
- planemo.galaxy.config
- planemo.galaxy.ephemeris_sleep
- planemo.galaxy.invocations.api
- planemo.galaxy.invocations.polling
- planemo.galaxy.invocations.progress
- planemo.galaxy.invocations.progress_display
- planemo.galaxy.invocations.simulations
- planemo.galaxy.profiles
- planemo.galaxy.run
- planemo.galaxy.serve
- planemo.galaxy.upload_progress
- planemo.galaxy.workflows
- planemo.git
- planemo.github_util
- planemo.glob
- planemo.io
- planemo.lint
- planemo.linters.biocontainer_registered
- planemo.linters.conda_requirements
- planemo.linters.doi
- planemo.linters.urls
- planemo.linters.xsd
- planemo.mulled
- planemo.network_util
- planemo.options
- planemo.reports.allure
- planemo.reports.build_report
- planemo.reports.xunit_handler
- planemo.runnable
- planemo.runnable_resolve
- planemo.shed
- planemo.shed2tap.base
- planemo.shed_lint
- planemo.templates
- planemo.test._check_output
- planemo.test.data
- planemo.test.results
- planemo.tool_builder
- planemo.tool_lint
- planemo.tools
- planemo.training
- planemo.virtualenv
- planemo.workflow_lint
- planemo.xml.diff
- planemo.xml.validation