Source code for planemo.linters.xsd

"""Tool linting module that lints Galaxy tool against experimental XSD."""

import copy
import os
import tempfile

import galaxy.tool_util

import planemo.lint

TOOL_XSD = os.path.join(os.path.dirname(galaxy.tool_util.__file__), "xsd", "galaxy.xsd")

[docs] def lint_tool_xsd(tool_xml, lint_ctx): """Write a temp file out and lint it.""" with tempfile.NamedTemporaryFile() as tf: _clean_root(tool_xml).write( planemo.lint.lint_xsd(lint_ctx, TOOL_XSD,
def _clean_root(tool_xml): """XSD assumes macros have been expanded, so remove them.""" clean_tool_xml = copy.deepcopy(tool_xml) to_remove = [] for macros_el in clean_tool_xml.getroot().findall("macros"): to_remove.append(macros_el) for macros_el in to_remove: clean_tool_xml.getroot().remove(macros_el) return clean_tool_xml