Welcome to Planemo’s documentation!¶
Contents:
- Quick Start
- Installation
- Configuration
- Virtual Appliance
- Building Galaxy Tools
- Building Common Workflow Language Tools
- Publishing to the Tool Shed
- Test Format
- Best Practices for Maintaining Galaxy Workflows
- Running Galaxy workflows
- Automating Galaxy Workflows
- Autoupdating tools
- Commands
autoupdate
commandci_find_repos
commandci_find_tools
commandci_setup
commandclone
commandconda_build
commandconda_env
commandconda_init
commandconda_install
commandconda_search
commandconfig_init
commandcontainer_register
commandcreate_alias
commanddatabase_create
commanddatabase_delete
commanddatabase_list
commanddelete_alias
commanddocker_build
commanddocker_shell
commanddockstore_init
commanddocs
commandlint
commandlist_alias
commandlist_invocations
commandlist_repos
commandmerge_test_reports
commandmull
commandmulled_init
commandnormalize
commandopen
commandprofile_create
commandprofile_delete
commandprofile_list
commandproject_init
commandpull_request
commandrerun
commandrun
commandserve
commandshare_test
commandshed_build
commandshed_create
commandshed_diff
commandshed_init
commandshed_lint
commandshed_serve
commandshed_test
commandshed_update
commandshed_upload
commandsyntax
commandtest
commandtest_reports
commandtool_init
commandtraining_fill_data_library
commandtraining_generate_from_wf
commandtraining_init
commandupload_data
commandworkflow_convert
commandworkflow_edit
commandworkflow_job_init
commandworkflow_lint
commandworkflow_test_init
commandworkflow_test_on_invocation
commandworkflow_upload
command
- FAQs
- What is Planemo?
- Is Planemo the right tool for me?
- What is the difference between Galaxy and CWL? Which should I use?
- Can I develop Galaxy tools without Planemo?
- Where can I learn to write tools?
- How do I set up deployment to the ToolShed with Planemo?
- How can I automate workflow execution with Planemo?
- How can I contribute to the project?
- Galaxy Tool Framework Changes
- Code of Conduct
- Contributing
- Project Governance
- Release Checklist
- History
- 0.75.26 (2024-09-24)
- 0.75.25 (2024-08-11)
- 0.75.24 (2024-07-04)
- 0.75.23 (2024-05-08)
- 0.75.22 (2024-04-04)
- 0.75.21 (2024-02-01)
- 0.75.20 (2024-01-30)
- 0.75.19 (2023-12-06)
- 0.75.18 (2023-11-16)
- 0.75.17 (2023-11-01)
- 0.75.16 (2023-11-01)
- 0.75.15 (2023-10-29)
- 0.75.14 (2023-10-19)
- 0.75.13 (2023-10-18)
- 0.75.12 (2023-09-18)
- 0.75.11 (2023-09-14)
- 0.75.10 (2023-09-01)
- 0.75.9 (2023-06-29)
- 0.75.8 (2023-06-09)
- 0.75.7 (2023-03-01)
- 0.75.6 (2023-02-22)
- 0.75.5 (2023-02-10)
- 0.75.4 (2023-02-09)
- 0.75.3 (2022-11-30)
- 0.75.2 (2022-11-02)
- 0.75.1 (2022-10-31)
- 0.75.0 (2022-10-28)
- 0.74.11 (2022-06-08)
- 0.74.10 (2022-05-31)
- 0.74.9 (2021-11-03)
- 0.74.8 (2021-10-10)
- 0.74.7 (2021-09-21)
- 0.74.6 (2021-07-23)
- 0.74.5 (2021-06-25)
- 0.74.4 (2021-06-01)
- 0.74.3 (2021-02-25)
- 0.74.2 (2021-02-21)
- 0.74.1 (2021-01-03)
- 0.74.0 (2020-12-30)
- 0.73.0 (2020-12-28)
- 0.72.0 (2020-08-04)
- 0.71.0 (2020-08-03)
- 0.70.0 (2020-01-29)
- 0.62.1 (2019-10-14)
- 0.62.0 (2019-10-11)
- 0.61.0 (2019-07-08)
- 0.60.0 (2019-05-31)
- 0.59.0 (2019-05-09)
- 0.58.2 (2019-03-01)
- 0.58.1 (2019-01-03)
- 0.58.0 (2019-01-01)
- 0.57.1 (2018-11-23)
- 0.57.0 (2018-11-19)
- 0.56.0 (2018-10-30)
- 0.55.0 (2018-09-12)
- 0.54.0 (2018-06-06)
- 0.53.0 (2018-05-22)
- 0.52.0 (2018-05-20)
- 0.51.0 (2018-05-19)
- 0.50.1 (2018-05-11)
- 0.50.0 (2018-05-10)
- 0.49.2 (2018-05-09)
- 0.49.1 (2018-05-06)
- 0.49.0 (2018-05-06)
- 0.48.0 (2018-02-28)
- 0.47.0 (2017-11-18)
- 0.46.1 (2017-09-26)
- 0.46.0 (2017-09-15)
- 0.45.0 (2017-09-06)
- 0.44.0 (2017-06-22)
- 0.43.0 (2017-06-22)
- 0.42.1 (2017-06-16)
- 0.42.0 (2017-06-15)
- 0.41.0 (2017-06-05)
- 0.40.1 (2017-05-03)
- 0.40.0 (2017-03-16)
- 0.39.0 (2017-03-15)
- 0.38.1 (2017-02-06)
- 0.38.0 (2017-02-06)
- 0.37.0 (2017-01-25)
- 0.36.1 (2016-12-12)
- 0.36.0 (2016-12-11)
- 0.35.0 (2016-11-14)
- 0.34.1 (2016-10-12)
- 0.34.0 (2016-10-05)
- 0.33.2 (2016-09-28)
- 0.33.1 (2016-09-28)
- 0.33.0 (2016-09-23)
- 0.32.0 (2016-09-16)
- 0.31.0 (2016-09-06)
- 0.30.2 (2016-09-01)
- 0.30.1 (2016-09-01)
- 0.30.0 (2016-09-01)
- 0.29.1 (2016-08-19)
- 0.29.0 (2016-08-19)
- 0.28.0 (2016-08-17)
- 0.27.0 (2016-06-22)
- 0.26.0 (2016-05-20)
- 0.25.1 (2016-05-11)
- 0.25.0 (2016-05-11)
- 0.24.2 (2016-04-25)
- 0.24.1 (2016-04-08)
- 0.24.0 (2016-03-29)
- 0.23.0 (2016-02-15)
- 0.22.2 (2016-01-14)
- 0.22.1 (2016-01-14)
- 0.22.0 (2016-01-13)
- 0.21.1 (2015-11-29)
- 0.21.0 (2015-11-29)
- 0.20.0 (2015-11-11)
- 0.19.0 (2015-11-03)
- 0.18.1 (2015-10-22)
- 0.18.0 (2015-10-20)
- 0.17.0 (2015-10-19)
- 0.16.0 (2015-10-07)
- 0.15.0 (2015-10-01)
- 0.14.0 (2015-08-06)
- 0.13.2 (2015-07-06)
- 0.13.1 (2015-07-01)
- 0.13.0 (2015-06-28)
- 0.12.2 (2015-05-23)
- 0.12.1 (2015-05-21)
- 0.12.0 (2015-05-21)
- 0.11.1 (2015-05-12)
- 0.11.0 (2015-05-12)
- 0.10.0 (2015-05-06)
- 0.9.0 (2015-05-03)
- 0.8.4 (2015-04-30)
- 0.8.3 (2015-04-29)
- 0.8.2 (2015-04-29)
- 0.8.1 (2015-04-28)
- 0.8.0 (2015-04-27)
- 0.7.0 (2015-04-13)
- 0.6.0 (2015-03-16)
- 0.5.0 (2015-02-22)
- 0.4.2 (2015-02-21)
- 0.4.1 (2015-02-16)
- 0.4.0 (2015-02-16)
- 0.3.1 (2015-02-15)
- 0.3.0 (2015-02-13)
- 0.2.0 (2015-01-13)
- 0.1.0 (2014-12-16)
- 0.0.1 (2014-10-04)