planemo.shed2tap package

Submodules

planemo.shed2tap.base module

class planemo.shed2tap.base.ActionPackage(name, version, repo)

Bases: object

class planemo.shed2tap.base.Actions(actions, os=None, architecture=None, action_packages=[])

Bases: object

downloads()

first_download()

to_bash()

class planemo.shed2tap.base.AutoconfAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'autoconf'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.BaseAction

Bases: object

action_type = None

classmethod from_elem(elem, package)

parse_action_repo(elem)

parse_package_elems(elem)

same_as(other)

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.BasePackage(dependencies, package_el, install_el, readme)

Bases: object

get_all_actions()

has_explicit_set_environments()

has_multiple_set_environments()

has_no_achitecture_install()

parse_action(action)

parse_action_package(elem)

parse_actions(actions)

class planemo.shed2tap.base.ChangeDirectoryAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'change_directory'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.ChmodAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'chmod'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.Dependencies(dependencies_file, repo=None, package_factory=None)

Bases: object

Base class for parsing Tool Shed dependency files.

single_package()

class planemo.shed2tap.base.Dependency(dependencies, package_el, repository_el)

Bases: object

class planemo.shed2tap.base.DownloadBinary(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'download_binary'

class planemo.shed2tap.base.DownloadByUrlAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'download_by_url'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.DownloadFileAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'download_file'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.MakeDirectoryAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'make_directory'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.MakeInstallAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'make_install'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.MoveDirectoryFilesAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'move_directory_files'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.MoveFileAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'move_file'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.Repo(**kwds)

Bases: object

static from_api(prefix, repo_json)

static from_xml(elem)

get_file(path)

recipe_base_name()

class planemo.shed2tap.base.SetEnvironmentAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'set_environment'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.SetEnvironmentForInstallAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'set_environment_for_install'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.SetVariable(elem)

Bases: object

class planemo.shed2tap.base.SetupPerlEnvironmentAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'setup_perl_environment'

class planemo.shed2tap.base.SetupPythonEnvironmentAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'setup_python_environment'

class planemo.shed2tap.base.SetupREnvironmentAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'setup_r_environment'

class planemo.shed2tap.base.SetupRubyEnvironmentAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'setup_ruby_environment'

class planemo.shed2tap.base.SetupVirtualenvAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'setup_virtualenv'

class planemo.shed2tap.base.ShellCommandAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'shell_command'

to_bash()

Return lists of bash shell commands to execute this action.

This method is be implemented by each sub-class, and will return two list of strings (for dep_install.sh and env.sh respectively).

class planemo.shed2tap.base.TemplateShellCommandAction(elem)

Bases: planemo.shed2tap.base.BaseAction

action_type = 'template_command'

planemo.shed2tap.base.asbool(obj)

Module contents