planemo.cwl package
Submodules
planemo.cwl.run module
Module defines a planemo abstraction around running cwltool.
cwltool is an executable Python script and library mostly maintained by Peter Amstutz and serves the reference implementation for the CWL. It can be found at https://github.com/common-workflow-language/cwltool,
- planemo.cwl.run.run_cwltool(ctx: PlanemoCliContext, runnable: Runnable, job_path: str, **kwds) ErrorRunResponse | CwlToolRunResponse [source]
Translate planemo kwds to cwltool kwds and run cwltool main function.
planemo.cwl.toil module
Module contents
Entry point for modules describing abstractions for dealing with CWL artifacts.
- planemo.cwl.run_cwltool(ctx: PlanemoCliContext, runnable: Runnable, job_path: str, **kwds) ErrorRunResponse | CwlToolRunResponse [source]
Translate planemo kwds to cwltool kwds and run cwltool main function.