Source code for planemo.engine.toil

"""Module contianing the :class:`ToilEngine` implementation of :class:`Engine`."""

from planemo import cwl
from planemo.runnable import RunnableType
from .interface import BaseEngine


[docs]class ToilEngine(BaseEngine): """An :class:`Engine` implementation backed by Toil. More information on toil can be found at https://github.com/BD2KGenomics/toil. """ handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] def _run(self, runnable, job_path): """Run CWL job using Toil.""" path = runnable.path return cwl.run_toil(self._ctx, path, job_path, **self._kwds)
__all__ = ("ToilEngine",)