Source code for planemo.engine.toil

"""Module contianing the :class:`ToilEngine` implementation of :class:`Engine`."""

from planemo import cwl
from planemo.runnable import RunnableType
from .interface import BaseEngine


[docs]class ToilEngine(BaseEngine): """An :class:`Engine` implementation backed by Toil. More information on toil can be found at https://github.com/BD2KGenomics/toil. """ handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] def _run(self, runnables, job_paths): """Run CWL job using Toil.""" results = [] for runnable, job_path in zip(runnables, job_paths): results.append(cwl.run_toil(self._ctx, runnable, job_path, **self._kwds)) return results
__all__ = ("ToilEngine",)