Python Module Index

p


	p
	`planemo`
	`planemo.autopygen`
	`planemo.autopygen.argument_parser_conversion`
	`planemo.autopygen.commands`
	`planemo.autopygen.commands.command_utils`
	`planemo.autopygen.param_info`
	`planemo.autopygen.source_file_parsing`
	`planemo.autopygen.source_file_parsing.constants`
	`planemo.autopygen.source_file_parsing.decoy_parser`
	`planemo.autopygen.source_file_parsing.local_module_parsing`
	`planemo.autopygen.source_file_parsing.parser_discovery_and_init`
	`planemo.autopygen.source_file_parsing.parsing_commons`
	`planemo.autopygen.source_file_parsing.parsing_exceptions`
	`planemo.autopygen.source_file_parsing.unknown_names_discovery`
	`planemo.autopygen.xml`
	`planemo.autopygen.xml.xml_utils`
	`planemo.autoupdate`
	`planemo.ci`
	`planemo.cli`
	`planemo.cli_metadata`
	`planemo.commands`
	`planemo.commands.cmd_ci_find_repos`
	`planemo.commands.cmd_ci_find_tools`
	`planemo.commands.cmd_ci_setup`
	`planemo.commands.cmd_cli_metadata`
	`planemo.commands.cmd_clone`
	`planemo.commands.cmd_conda_build`
	`planemo.commands.cmd_conda_env`
	`planemo.commands.cmd_conda_init`
	`planemo.commands.cmd_conda_install`
	`planemo.commands.cmd_conda_search`
	`planemo.commands.cmd_config_init`
	`planemo.commands.cmd_container_register`
	`planemo.commands.cmd_create_alias`
	`planemo.commands.cmd_create_gist`
	`planemo.commands.cmd_database_create`
	`planemo.commands.cmd_database_delete`
	`planemo.commands.cmd_database_list`
	`planemo.commands.cmd_delete_alias`
	`planemo.commands.cmd_docker_build`
	`planemo.commands.cmd_docker_shell`
	`planemo.commands.cmd_dockstore_init`
	`planemo.commands.cmd_docs`
	`planemo.commands.cmd_format`
	`planemo.commands.cmd_invocation_export`
	`planemo.commands.cmd_job_config_init`
	`planemo.commands.cmd_lint`
	`planemo.commands.cmd_list_alias`
	`planemo.commands.cmd_list_invocations`
	`planemo.commands.cmd_list_repos`
	`planemo.commands.cmd_mull`
	`planemo.commands.cmd_mulled_init`
	`planemo.commands.cmd_normalize`
	`planemo.commands.cmd_open`
	`planemo.commands.cmd_profile_create`
	`planemo.commands.cmd_profile_delete`
	`planemo.commands.cmd_profile_job_config_init`
	`planemo.commands.cmd_profile_list`
	`planemo.commands.cmd_project_init`
	`planemo.commands.cmd_pull_request`
	`planemo.commands.cmd_rerun`
	`planemo.commands.cmd_serve`
	`planemo.commands.cmd_share_test`
	`planemo.commands.cmd_shed_build`
	`planemo.commands.cmd_shed_create`
	`planemo.commands.cmd_shed_diff`
	`planemo.commands.cmd_shed_download`
	`planemo.commands.cmd_shed_init`
	`planemo.commands.cmd_shed_lint`
	`planemo.commands.cmd_shed_serve`
	`planemo.commands.cmd_shed_update`
	`planemo.commands.cmd_shed_upload`
	`planemo.commands.cmd_slurm_init`
	`planemo.commands.cmd_syntax`
	`planemo.commands.cmd_tool_init`
	`planemo.commands.cmd_training_fill_data_library`
	`planemo.commands.cmd_training_generate_from_wf`
	`planemo.commands.cmd_training_init`
	`planemo.commands.cmd_upload_data`
	`planemo.commands.cmd_workflow_convert`
	`planemo.commands.cmd_workflow_edit`
	`planemo.commands.cmd_workflow_job_init`
	`planemo.commands.cmd_workflow_lint`
	`planemo.commands.cmd_workflow_test_init`
	`planemo.commands.cmd_workflow_track`
	`planemo.commands.cmd_workflow_upload`
	`planemo.conda`
	`planemo.config`
	`planemo.context`
	`planemo.cwl`
	`planemo.cwl.run`
	`planemo.cwl.toil`
	`planemo.database`
	`planemo.database.factory`
	`planemo.database.interface`
	`planemo.database.postgres`
	`planemo.database.postgres_docker`
	`planemo.database.postgres_singularity`
	`planemo.deps`
	`planemo.docker`
	`planemo.engine`
	`planemo.engine.cwltool`
	`planemo.engine.factory`
	`planemo.engine.galaxy`
	`planemo.engine.interface`
	`planemo.engine.toil`
	`planemo.exit_codes`
	`planemo.galaxy`
	`planemo.galaxy.activity`
	`planemo.galaxy.api`
	`planemo.galaxy.config`
	`planemo.galaxy.distro_tools`
	`planemo.galaxy.ephemeris_sleep`
	`planemo.galaxy.invocations`
	`planemo.galaxy.invocations.api`
	`planemo.galaxy.invocations.polling`
	`planemo.galaxy.invocations.progress`
	`planemo.galaxy.invocations.progress_display`
	`planemo.galaxy.invocations.simulations`
	`planemo.galaxy.profiles`
	`planemo.galaxy.run`
	`planemo.galaxy.serve`
	`planemo.galaxy.upload_progress`
	`planemo.galaxy.workflows`
	`planemo.git`
	`planemo.github_util`
	`planemo.glob`
	`planemo.io`
	`planemo.lint`
	`planemo.linters`
	`planemo.linters.biocontainer_registered`
	`planemo.linters.conda_requirements`
	`planemo.linters.doi`
	`planemo.linters.urls`
	`planemo.linters.xsd`
	`planemo.mulled`
	`planemo.network_util`
	`planemo.options`
	`planemo.reports`
	`planemo.reports.allure`
	`planemo.reports.build_report`
	`planemo.reports.xunit_handler`
	`planemo.runnable`
	`planemo.runnable_resolve`
	`planemo.shed`
	`planemo.shed.diff`
	`planemo.shed.interface`
	`planemo.shed2tap`
	`planemo.shed2tap.base`
	`planemo.shed_lint`
	`planemo.templates`
	`planemo.test`
	`planemo.test.data`
	`planemo.test.results`
	`planemo.tool_builder`
	`planemo.tool_lint`
	`planemo.tools`
	`planemo.training`
	`planemo.training.tool_input`
	`planemo.training.topic`
	`planemo.training.tutorial`
	`planemo.training.utils`
	`planemo.virtualenv`
	`planemo.workflow_lint`
	`planemo.xml`
	`planemo.xml.diff`
	`planemo.xml.validation`