planemo.commands package ======================== Submodules ---------- planemo.commands.cmd\_autoupdate module --------------------------------------- .. automodule:: planemo.commands.cmd_autoupdate :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_ci\_find\_repos module -------------------------------------------- .. automodule:: planemo.commands.cmd_ci_find_repos :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_ci\_find\_tools module -------------------------------------------- .. automodule:: planemo.commands.cmd_ci_find_tools :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_ci\_setup module -------------------------------------- .. automodule:: planemo.commands.cmd_ci_setup :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_cli\_metadata module ------------------------------------------ .. automodule:: planemo.commands.cmd_cli_metadata :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_clone module ---------------------------------- .. automodule:: planemo.commands.cmd_clone :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_conda\_build module ----------------------------------------- .. automodule:: planemo.commands.cmd_conda_build :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_conda\_env module --------------------------------------- .. automodule:: planemo.commands.cmd_conda_env :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_conda\_init module ---------------------------------------- .. automodule:: planemo.commands.cmd_conda_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_conda\_install module ------------------------------------------- .. automodule:: planemo.commands.cmd_conda_install :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_conda\_search module ------------------------------------------ .. automodule:: planemo.commands.cmd_conda_search :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_config\_init module ----------------------------------------- .. automodule:: planemo.commands.cmd_config_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_container\_register module ------------------------------------------------ .. automodule:: planemo.commands.cmd_container_register :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_create\_alias module ------------------------------------------ .. automodule:: planemo.commands.cmd_create_alias :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_create\_gist module ----------------------------------------- .. automodule:: planemo.commands.cmd_create_gist :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_database\_create module --------------------------------------------- .. automodule:: planemo.commands.cmd_database_create :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_database\_delete module --------------------------------------------- .. automodule:: planemo.commands.cmd_database_delete :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_database\_list module ------------------------------------------- .. automodule:: planemo.commands.cmd_database_list :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_delete\_alias module ------------------------------------------ .. automodule:: planemo.commands.cmd_delete_alias :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_docker\_build module ------------------------------------------ .. automodule:: planemo.commands.cmd_docker_build :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_docker\_shell module ------------------------------------------ .. automodule:: planemo.commands.cmd_docker_shell :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_dockstore\_init module -------------------------------------------- .. automodule:: planemo.commands.cmd_dockstore_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_docs module --------------------------------- .. automodule:: planemo.commands.cmd_docs :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_format module ----------------------------------- .. automodule:: planemo.commands.cmd_format :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_invocation\_download module ------------------------------------------------- .. automodule:: planemo.commands.cmd_invocation_download :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_invocation\_export module ----------------------------------------------- .. automodule:: planemo.commands.cmd_invocation_export :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_job\_config\_init module ---------------------------------------------- .. automodule:: planemo.commands.cmd_job_config_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_lint module --------------------------------- .. automodule:: planemo.commands.cmd_lint :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_list\_alias module ---------------------------------------- .. automodule:: planemo.commands.cmd_list_alias :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_list\_invocations module ---------------------------------------------- .. automodule:: planemo.commands.cmd_list_invocations :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_list\_repos module ---------------------------------------- .. automodule:: planemo.commands.cmd_list_repos :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_merge\_test\_reports module ------------------------------------------------- .. automodule:: planemo.commands.cmd_merge_test_reports :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_mull module --------------------------------- .. automodule:: planemo.commands.cmd_mull :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_mulled\_init module ----------------------------------------- .. automodule:: planemo.commands.cmd_mulled_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_normalize module -------------------------------------- .. automodule:: planemo.commands.cmd_normalize :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_open module --------------------------------- .. automodule:: planemo.commands.cmd_open :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_output\_schema module ------------------------------------------- .. automodule:: planemo.commands.cmd_output_schema :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_profile\_create module -------------------------------------------- .. automodule:: planemo.commands.cmd_profile_create :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_profile\_delete module -------------------------------------------- .. automodule:: planemo.commands.cmd_profile_delete :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_profile\_job\_config\_init module ------------------------------------------------------- .. automodule:: planemo.commands.cmd_profile_job_config_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_profile\_list module ------------------------------------------ .. automodule:: planemo.commands.cmd_profile_list :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_project\_init module ------------------------------------------ .. automodule:: planemo.commands.cmd_project_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_pull\_request module ------------------------------------------ .. automodule:: planemo.commands.cmd_pull_request :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_rerun module ---------------------------------- .. automodule:: planemo.commands.cmd_rerun :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_run module -------------------------------- .. automodule:: planemo.commands.cmd_run :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_serve module ---------------------------------- .. automodule:: planemo.commands.cmd_serve :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_share\_test module ---------------------------------------- .. automodule:: planemo.commands.cmd_share_test :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_build module ---------------------------------------- .. automodule:: planemo.commands.cmd_shed_build :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_create module ----------------------------------------- .. automodule:: planemo.commands.cmd_shed_create :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_diff module --------------------------------------- .. automodule:: planemo.commands.cmd_shed_diff :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_download module ------------------------------------------- .. automodule:: planemo.commands.cmd_shed_download :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_init module --------------------------------------- .. automodule:: planemo.commands.cmd_shed_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_lint module --------------------------------------- .. automodule:: planemo.commands.cmd_shed_lint :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_serve module ---------------------------------------- .. automodule:: planemo.commands.cmd_shed_serve :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_test module --------------------------------------- .. automodule:: planemo.commands.cmd_shed_test :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_update module ----------------------------------------- .. automodule:: planemo.commands.cmd_shed_update :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_shed\_upload module ----------------------------------------- .. automodule:: planemo.commands.cmd_shed_upload :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_slurm\_init module ---------------------------------------- .. automodule:: planemo.commands.cmd_slurm_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_syntax module ----------------------------------- .. automodule:: planemo.commands.cmd_syntax :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_test module --------------------------------- .. automodule:: planemo.commands.cmd_test :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_test\_reports module ------------------------------------------ .. automodule:: planemo.commands.cmd_test_reports :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_tool\_init module --------------------------------------- .. automodule:: planemo.commands.cmd_tool_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_training\_fill\_data\_library module ---------------------------------------------------------- .. automodule:: planemo.commands.cmd_training_fill_data_library :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_training\_generate\_from\_wf module --------------------------------------------------------- .. automodule:: planemo.commands.cmd_training_generate_from_wf :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_training\_init module ------------------------------------------- .. automodule:: planemo.commands.cmd_training_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_upload\_data module ----------------------------------------- .. automodule:: planemo.commands.cmd_upload_data :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_convert module ---------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_convert :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_edit module ------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_edit :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_job\_init module ------------------------------------------------ .. automodule:: planemo.commands.cmd_workflow_job_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_lint module ------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_lint :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_test\_init module ------------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_test_init :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_test\_on\_invocation module ----------------------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_test_on_invocation :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_track module -------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_track :members: :show-inheritance: :undoc-members: planemo.commands.cmd\_workflow\_upload module --------------------------------------------- .. automodule:: planemo.commands.cmd_workflow_upload :members: :show-inheritance: :undoc-members: Module contents --------------- .. automodule:: planemo.commands :members: :show-inheritance: :undoc-members: